Package: zalpha 0.3.0.9999

zalpha: Run a Suite of Selection Statistics

A suite of statistics for identifying areas of the genome under selective pressure. See Jacobs, Sluckin and Kivisild (2016) <doi:10.1534/genetics.115.185900>.

Authors:Clare Horscroft

zalpha_0.3.0.9999.tar.gz
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zalpha_0.3.0.9999.tgz(r-4.6-any)zalpha_0.3.0.9999.tgz(r-4.5-any)
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zalpha_0.3.0.9999.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
zalpha/json (API)
NEWS

# Install 'zalpha' in R:
install.packages('zalpha', repos = c('https://chorscroft.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chorscroft/zalpha/issues

Datasets:
  • LDprofile - Dataset containing an example LD profile
  • snps - Dataset containing details on simulated SNPs

On CRAN:

Conda:

evolutiongenetics

4.00 score 2 stars 4 scripts 231 downloads 16 exports 0 dependencies

Last updated from:dd6fea5dca. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK125
source / vignettesOK169
linux-release-x86_64OK120
macos-release-arm64OK163
macos-oldrel-arm64OK210
windows-develOK85
windows-releaseOK97
windows-oldrelOK95
wasm-releaseOK90

Exports:create_LDprofileL_plus_RLRZalphaZalpha_allZalpha_BetaCDFZalpha_expectedZalpha_log_rsq_over_expectedZalpha_rsq_over_expectedZalpha_ZscoreZbetaZbeta_BetaCDFZbeta_expectedZbeta_log_rsq_over_expectedZbeta_rsq_over_expectedZbeta_Zscore

Dependencies:

zalpha

Rendered fromzalpha.Rmdusingknitr::rmarkdownon May 22 2026.

Last update: 2021-07-14
Started: 2020-02-24