Package: zalpha 0.3.0.9999

zalpha: Run a Suite of Selection Statistics

A suite of statistics for identifying areas of the genome under selective pressure. See Jacobs, Sluckin and Kivisild (2016) <doi:10.1534/genetics.115.185900>.

Authors:Clare Horscroft

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zalpha/json (API)
NEWS

# Install 'zalpha' in R:
install.packages('zalpha', repos = c('https://chorscroft.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/chorscroft/zalpha/issues

Datasets:
  • LDprofile - Dataset containing an example LD profile
  • snps - Dataset containing details on simulated SNPs

On CRAN:

evolutiongenetics

4.00 score 2 stars 4 scripts 207 downloads 16 exports 0 dependencies

Last updated 3 years agofrom:dd6fea5dca. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 10 2024
R-4.5-winOKNov 10 2024
R-4.5-linuxOKNov 10 2024
R-4.4-winOKNov 10 2024
R-4.4-macOKNov 10 2024
R-4.3-winOKNov 10 2024
R-4.3-macOKNov 10 2024

Exports:create_LDprofileL_plus_RLRZalphaZalpha_allZalpha_BetaCDFZalpha_expectedZalpha_log_rsq_over_expectedZalpha_rsq_over_expectedZalpha_ZscoreZbetaZbeta_BetaCDFZbeta_expectedZbeta_log_rsq_over_expectedZbeta_rsq_over_expectedZbeta_Zscore

Dependencies:

zalpha

Rendered fromzalpha.Rmdusingknitr::rmarkdownon Nov 10 2024.

Last update: 2021-07-14
Started: 2020-02-24